Publications

Highlights and Cover Papers

Full Publications

 Co-first authors

* Corresponding author(s)

Bold names indicate SynBEE Lab members

2024

25

Emerging electrocatalytic textile electrodes for highly efficient alkaline water electrolysis

Mo, J.†, Choi, W.†, Yang, D.*, and Cho, J.*

Under Review

24

Gene expression modulation tools for bacterial synthetic biology

Chang, M., Ahn, S.J., Han, T.*, and Yang, D.*

Biotechnol. Sustain. Mater., In press

23

Acetyl-CoA-independent malonyl-CoA biosynthesis (News and Views)

Yang, D.*

Nat. Catal., 7, 347–349 (2024.04.26)

22

P-Type Colloidal InSb Quantum Dot Ink Enables III–V Group Bulk-Heterojunction Shortwave Infrared (SWIR) Photodetector

Jee, S., Si, M.-J., Choi, J.-H, Kim, D., Kim, C., Yang, D.*, and Baek, S.-W.*

Adv. Opt. Mater., In press

2023

21

Metabolic engineering and synthetic biology approaches for the heterologous production of aromatic polyketides

Yang, D.*, Eun, H., Prabowo, C.P.S.

Int. J. Mol. Sci., 24(10), 8923 (2023.05.18)

20

Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs

Cho, J.S.†, Yang, D., Prabowo, C.P.S., Ghiffary, M.R., Han, T.H., Choi, K.R., Moon, C.W., Zhou, H., Ryu, J.Y., Kim, H.U., and Lee, S.Y.*

Nat. Commun., 14, 2359 (2023.04.24)

19

Group contribution based graph convolution network: predicting vapor–liquid equilibrium with COSMO-SAC-ML

Ryu, B.C., Hwang, S.Y., Kang, S.S., Kang, J.W.*, and Yang, D.*

Int. J. Thermophys., 44, 49 (2023.02.08)

2022

18

Metabolic and cellular engineering for the production of natural products

Yang, D.*, Eun, H., Prabowo, C.P.S., Cho, S., and Lee, S.Y.*

Curr Opin Biotechnol, 77, 102760 (2022.10)

Before Korea University

17

Application of lactic acid bacteria (LAB) in sustainable agricultural: Advantages and limitation

Kim, S.-J., Raman, J., Choi, K.R., Eun, H., Yang, D., Ko, Y.-J, Kim, J.-S.*

Int J Mol Sci, 23(14), 7784 (2022.07)

16

Production of natural colorants by metabolically engineered microorganisms

Prabowo, C.P.S.†, Eun, H.†, Yang, D., Huccetogullari, D., Jegadeesh, R., Kim, S.-J., and Lee, S.Y.*

Trends Chem., 4 (7), 608-626 (2022.07)

15

Production of phenylpropanoids and flavonolignans from glycerol by metabolically engineered Escherichia coli

Park, S.Y.†, Yang, D.†, Ha, S.H.†, and Lee, S.Y.*

Biotechnol. Bioeng., 119 (3), 946-962 (2022.03)

2021

14

Escherichia coli as a platform microbial host for systems metabolic engineering

Yang, D., Prabowo, C.P.S., Eun, H., Park, S.Y., Cho, I.J., Jiao, S., and Lee, S.Y.*

Essays Biochem., 65 (2), 225–246 (2021.07.26)

13

Production of diversified polyketides by metabolic engineering

Yang, D., Zhou, H.†, and Lee, S.Y.*

Biochemistry, 60, 3424-3426, doi: 10.1021/acs.biochem.1c00290 (2021.05.24)

12

Production of rainbow colorants by metabolically engineered Escherichia coli

Yang, D., Park, S.Y.†, and Lee, S.Y.*

Adv. Sci., 8, 2100743, doi: 10.1002/advs.202100743 (2021.05.25)

11

Production of carminic acid by metabolically engineered Escherichia coli

Yang, D., Jang, W.D., and Lee, S.Y.*

J. Am. Chem. Soc., 143 (14), 5364-5377 (2021.04.02)

2020

10

Metabolic engineering of Escherichia coli for natural products biosynthesis

Yang, D., Park, S.Y.†, Park, Y.S., Eun, H., and Lee, S.Y.*

Trends Biotechnol, 38 (7): 745-765. (2020.07.01)

2019

9

Broad-spectrum gene repression using scaffold engineering of synthetic sRNAs

Noh, M.†, Yoo, S.M.†, Yang, D., and Lee, S.Y.*

ACS Synth Biol, 8 (6): 1452-1461 (2019.06.21)

8

Expanded synthetic small regulatory RNA expression platforms for rapid and multiplex gene expression knockdown

Yang, D., Yoo, S.M.†, Gu, C., Ryu, J.Y., Lee, J.E., and Lee, S.Y.*

Metab Eng, 54: 180-190 (2019.07)

7

Systems metabolic engineering strategies: integrating systems and synthetic biology with metabolic engineering

Choi, K.R., Jang, W.D., Yang, D., Cho, J.S., Park, D.H., and Lee, S.Y.*

Trends Biotechnol, 37 (8): 817-837 (2019.08.01)

6

Synthetic biology for natural compounds

Zhao, X.R., Park, S.Y., Yang, D., and Lee, S.Y.*

Biochemistry, 58: 1454-1456 (2019.03.19)

2018

5

Repurposing type III polyketide synthase as a malonyl-CoA biosensor for metabolic engineering in bacteria

Yang, D., Kim, W.J., Yoo, S.M., Choi, J.H., Ha, S.H., Lee, M.H., and Lee, S.Y.*

Proc. Natl. Acad. Sci. U S A, 115(40): 9835-9844 (2018.10.02)

4

Metabolic engineering of Escherichia coli for the production of indirubin from glucose

Du, J.K., Yang, D., Luo, Z.W., and Lee, S.Y.*

J. Biotechnol., 267: 19-28 (2018.02.10)

3

Metabolic engineering of microorganisms for the production of natural compounds

Park, S.Y.†, Yang, D., Ha, S.H., and Lee, S.Y.*

Adv. Biosys., 2(1): 1700190 (2018.01)

2017

2

CRISPR/Cas9-coupled recombineering for metabolic engineering of Corynebacterium glutamicum

Cho, J.S.†, Choi, K.R.†, Prabowo, C.P.S., Shin, J.H., Yang, D., Jang, J., and Lee, S.Y.*

Metab. Eng., 42:157-167 (2017.07)

1

Systems metabolic engineering as an enabling technology in accomplishing sustainable development goals

Yang, D., Cho, J.S., Choi, K.R., Kim, H.U., and Lee, S.Y.*

Microb. Biotechnol., 10(5): 1254-1258 (2017.07.11)

Book chapters

* Co-first authors

† Co-corresponding authors

2

Metabolic engineering of E. coli

Luo, Z.W., Ahn, J.H., Chae, T.U., Choi, S.Y., Park, S.Y., Choi, Y., Kim, J., Prabowo, C.P.S., Lee, J.A., Yang, D., Han, T., Xu, H., and Lee, S.Y.*

Metabolic Engineering (Ed. Nielsen, J., Stephanopoulos, G., Lee, S.Y.), Wiley-VCH, doi:10.1002/9783527823468.ch11 (2021.06.04)

1

Systems Metabolic Engineering of Escherichia coli

Choi, K.R.†, Shin, J.H.†, Cho, J.S., Yang, D., and Lee, S.Y.*

EcoSal Plus, doi:10.1128/ecosalplus.ESP-0010-2015 (2016. 03.10)