Publications
Highlights and Cover Papers
Full Publications
† Co-first authors
* Corresponding author(s)
Bold names indicate SynBEE Lab members
2024
28
Synthetic biology strategies for the production non-natural derivatives of natural colorants
Kim, K.†, Shim, K.†, Wang, Y.W., and Yang, D.*
Under review
27
Metabolic engineering approaches for the biosynthesis of antibiotics
Yook, G.†, Nam, J.†, Jo, Y., Yoon, H., and Yang, D.*
Under review
26
MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
Zdouc, M.M.†, Blin, K.†, Yang, D., and Weber, T.*, Medema, M.H.* et al.
In press
25
Gene expression modulation tools for bacterial synthetic biology
Chang, M., Ahn, S.J., Han, T.*, and Yang, D.*
Biotechnol. Sustain. Mater., 1, 6 (2024.07.15)
24
Jee, S., Si, M.-J., Choi, J.-H, Kim, D., Kim, C., Yang, D.*, and Baek, S.-W.*
Adv. Opt. Mater., 12(18), 2303097 (2024.06.26)
23
Emerging electrocatalytic textile electrodes for highly efficient alkaline water electrolysis
Mo, J.†, Choi, W.†, Yang, D.*, and Cho, J.*
ACS Mater. Lett., 6(7), 3133-3160 (2024.06.20)
22
Acetyl-CoA-independent malonyl-CoA biosynthesis (News and Views)
Yang, D.*
Nat. Catal., 7, 347–349 (2024.04.26)
2023
21
Yang, D.*, Eun, H., Prabowo, C.P.S.
Int. J. Mol. Sci., 24(10), 8923 (2023.05.18)
20
Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs
Cho, J.S.†, Yang, D.†, Prabowo, C.P.S., Ghiffary, M.R., Han, T.H., Choi, K.R., Moon, C.W., Zhou, H., Ryu, J.Y., Kim, H.U., and Lee, S.Y.*
Nat. Commun., 14, 2359 (2023.04.24)
19
Ryu, B.C., Hwang, S.Y., Kang, S.S., Kang, J.W.*, and Yang, D.*
Int. J. Thermophys., 44, 49 (2023.02.08)
2022
18
Metabolic and cellular engineering for the production of natural products
Yang, D.*, Eun, H., Prabowo, C.P.S., Cho, S., and Lee, S.Y.*
Curr Opin Biotechnol, 77, 102760 (2022.10)
Before Korea University
17
Application of lactic acid bacteria (LAB) in sustainable agricultural: Advantages and limitation
Kim, S.-J., Raman, J., Choi, K.R., Eun, H., Yang, D., Ko, Y.-J, Kim, J.-S.*
Int J Mol Sci, 23(14), 7784 (2022.07)
16
Production of natural colorants by metabolically engineered microorganisms
Prabowo, C.P.S.†, Eun, H.†, Yang, D., Huccetogullari, D., Jegadeesh, R., Kim, S.-J., and Lee, S.Y.*
Trends Chem., 4 (7), 608-626 (2022.07)
15
Park, S.Y.†, Yang, D.†, Ha, S.H.†, and Lee, S.Y.*
Biotechnol. Bioeng., 119 (3), 946-962 (2022.03)
2021
14
Escherichia coli as a platform microbial host for systems metabolic engineering
Yang, D., Prabowo, C.P.S., Eun, H., Park, S.Y., Cho, I.J., Jiao, S., and Lee, S.Y.*
Essays Biochem., 65 (2), 225–246 (2021.07.26)
13
Production of diversified polyketides by metabolic engineering
Yang, D.†, Zhou, H.†, and Lee, S.Y.*
Biochemistry, 60, 3424-3426, doi: 10.1021/acs.biochem.1c00290 (2021.05.24)
12
Production of rainbow colorants by metabolically engineered Escherichia coli
Yang, D.†, Park, S.Y.†, and Lee, S.Y.*
Adv. Sci., 8, 2100743, doi: 10.1002/advs.202100743 (2021.05.25)
11
Production of carminic acid by metabolically engineered Escherichia coli
Yang, D., Jang, W.D., and Lee, S.Y.*
J. Am. Chem. Soc., 143 (14), 5364-5377 (2021.04.02)
2020
10
Metabolic engineering of Escherichia coli for natural products biosynthesis
Yang, D.†, Park, S.Y.†, Park, Y.S., Eun, H., and Lee, S.Y.*
Trends Biotechnol, 38 (7): 745-765. (2020.07.01)
2019
9
Broad-spectrum gene repression using scaffold engineering of synthetic sRNAs
Noh, M.†, Yoo, S.M.†, Yang, D., and Lee, S.Y.*
ACS Synth Biol, 8 (6): 1452-1461 (2019.06.21)
8
Yang, D.†, Yoo, S.M.†, Gu, C., Ryu, J.Y., Lee, J.E., and Lee, S.Y.*
Metab Eng, 54: 180-190 (2019.07)
7
Choi, K.R., Jang, W.D., Yang, D., Cho, J.S., Park, D.H., and Lee, S.Y.*
Trends Biotechnol, 37 (8): 817-837 (2019.08.01)
6
Synthetic biology for natural compounds
Zhao, X.R., Park, S.Y., Yang, D., and Lee, S.Y.*
Biochemistry, 58: 1454-1456 (2019.03.19)
2018
5
Yang, D., Kim, W.J., Yoo, S.M., Choi, J.H., Ha, S.H., Lee, M.H., and Lee, S.Y.*
Proc. Natl. Acad. Sci. U S A, 115(40): 9835-9844 (2018.10.02)
4
Metabolic engineering of Escherichia coli for the production of indirubin from glucose
Du, J.K., Yang, D., Luo, Z.W., and Lee, S.Y.*
J. Biotechnol., 267: 19-28 (2018.02.10)
3
Metabolic engineering of microorganisms for the production of natural compounds
Park, S.Y.†, Yang, D.†, Ha, S.H., and Lee, S.Y.*
Adv. Biosys., 2(1): 1700190 (2018.01)
2017
2
CRISPR/Cas9-coupled recombineering for metabolic engineering of Corynebacterium glutamicum
Cho, J.S.†, Choi, K.R.†, Prabowo, C.P.S., Shin, J.H., Yang, D., Jang, J., and Lee, S.Y.*
Metab. Eng., 42:157-167 (2017.07)
1
Yang, D., Cho, J.S., Choi, K.R., Kim, H.U., and Lee, S.Y.*
Microb. Biotechnol., 10(5): 1254-1258 (2017.07.11)
Book chapters
* Co-first authors
† Co-corresponding authors
2
Metabolic engineering of E. coli
Luo, Z.W., Ahn, J.H., Chae, T.U., Choi, S.Y., Park, S.Y., Choi, Y., Kim, J., Prabowo, C.P.S., Lee, J.A., Yang, D., Han, T., Xu, H., and Lee, S.Y.*
Metabolic Engineering (Ed. Nielsen, J., Stephanopoulos, G., Lee, S.Y.), Wiley-VCH, doi:10.1002/9783527823468.ch11 (2021.06.04)
1
Systems Metabolic Engineering of Escherichia coli
Choi, K.R.†, Shin, J.H.†, Cho, J.S., Yang, D., and Lee, S.Y.*
EcoSal Plus, doi:10.1128/ecosalplus.ESP-0010-2015 (2016. 03.10)